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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Gata3
wikigenes
PDBj
CellType: Treg
ATCC
MeSH
RIKEN BRC
SRX018110
GSM523230: nTreg-Gata3 [ChIP-seq]
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Gata3
Cell type
Cell type Class
Blood
Cell type
Treg
NA
NA
Attributes by original data submitter
Sample
source_name
Naïve regulatory T cells
strain
C57BL/6
cell type
Naive regulatory T cells
chip antibody
anti-Gata3 (558686, BD bioscience)
Sequenced DNA Library
library_name
nTreg-Gata3 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
7399376
Reads aligned (%)
69.1
Duplicates removed (%)
27.5
Number of peaks
3081 (qval < 1E-05)
mm9
Number of total reads
7399376
Reads aligned (%)
69.0
Duplicates removed (%)
27.8
Number of peaks
3084 (qval < 1E-05)
Base call quality data from
DBCLS SRA